PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00144438001
Common NameGSBRNA2T00144438001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 359aa    MW: 39397.8 Da    PI: 6.1799
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00144438001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.62.5e-084686439
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htv 39
                          +C++++ ++++  C+d ++ lC++C   +H+g     H+ 
  GSBRNA2T00144438001 46 LICERCNAQPASVRCTDERVSLCQNCDWLGHNGatnshHKK 86
                         68*****************************9899997765 PP

2CCT56.59.9e-20301344144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R++a+ RYkeK+k RkF+K++rY sRK++A+ R RvKGrFvk+ 
  GSBRNA2T00144438001 301 RNNAVIRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 344
                          999**************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.887147IPR000315B-box-type zinc finger
CDDcd000211.41E-6447No hitNo description
SMARTSM003364.4E-7447IPR000315B-box-type zinc finger
PROSITE profilePS501199.34389IPR000315B-box-type zinc finger
PfamPF006433.1E-54686IPR000315B-box-type zinc finger
CDDcd000213.25E-54776No hitNo description
SMARTSM003363.54888IPR000315B-box-type zinc finger
PROSITE profilePS5101714.951301343IPR010402CCT domain
PfamPF062039.8E-15301343IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVHCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNAQPASVRC  60
TDERVSLCQN CDWLGHNGAT NSHHKKQTIN CYSGCPSSEE LASIWSFCLE LDFSKGGQSA  120
CEQGMGLMTI DEGTGEKKSG GHDVDVDQPG TSSAAQEKST LAKGPGVSED DFCGNLIMDE  180
MDMAFEKYDE LFGTAYNSSK DLFEHGGLES LFEKHEGLIQ GQQPAESNAA SGDSFMTCRT  240
EPIICFSSQP AHSNISFSGA TGEGNNAGDF QDCGVSSMQQ VSKETPLWCP PTAQEISATT  300
RNNAVIRYKE KKKARKFDKR VRYVSRKERA DVRRRVKGRF VKSGEAYDYD PLSPTRSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00144438001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151626.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10
SwissprotQ9LUA90.0COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A078DG730.0A0A078DG73_BRANA; BnaA06g30350D protein
STRINGBra037499.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]